GgaEX0016354 @ galGal3
Exon Skipping
Gene
ENSGALG00000010930 | STK39
Description
NA
Coordinates
chr7:20636451-20640399:+
Coord C1 exon
chr7:20636451-20636515
Coord A exon
chr7:20638477-20638610
Coord C2 exon
chr7:20639619-20640399
Length
134 bp
Sequences
Splice sites
3' ss Seq
GGGATATTTCTGTGTTTCAGCTG
3' ss Score
7.67
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TTGCTGCTAACTTACAGAAGATTGTAGATGATCCAAAGGCCTTGAAAACATTAACTTTTAAGTTG
Seq A exon
CTGGATTTATTACTTAAATGCTGGGGAGCAGTCAGTGTCACATATTTCAGATTCCAGTGAGAGAATACTCCTAGGCTTTACCAAGATCAGAATTAATAGTCAGTTGTAATTCAATGTCTCTTTCCCTTCTTAAG
Seq C2 exon
GCCTCTGGCTGCGATGGCACTGAGATTCCCGATGAAGTGAAGCTGATTGGGTTTGCTCAGTTAAGTGTCAGCTGATGTCTGTCCCTTGACCCCAAGACAAATTGTGAGATTGCGAAGAAGCCAGCTTAGATGCAAAGGAAAATTAATGCACCAAACACTGAGTTCTGCTTCATTCTCTAGCAATTCACAAAGTCAGAACGAGCAAAGCCCACAGCTACACCGCTGCTGCTAACATTCAAAATGCTACTAAATGTCTCTTAGCAGTTGATTTGGATTCCCCCTAAGTGAAAGGCCTGTGGAAGTGCACTCAGGTGGCTGTATTTATTGGTTACAAAAGAAATTTTATATCTTCTTTCCTAAAGTTTTGAGTGATACTATTTTCCTGTACTTGTGGATGATAATACTGCCTCTGTTATGTTATATTTAGAAGTAAACATAAATACAAAAGTTGAGAATTACTAGCTGAACTTGAATTCTAGTTTTAAAACTGACTGTGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010930-'19-24,'19-23,21-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCAAAGGCCTTGAAAACA
R:
GGGCTTTGCTCGTTCTGACTT
Band lengths:
247-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]