GgaEX0016437 @ galGal3
Exon Skipping
Gene
ENSGALG00000010971 | CSRNP3
Description
NA
Coordinates
chr7:21204118-21206522:-
Coord C1 exon
chr7:21206226-21206522
Coord A exon
chr7:21205873-21205902
Coord C2 exon
chr7:21204118-21205158
Length
30 bp
Sequences
Splice sites
3' ss Seq
AAACATGCAAATGGAAACAGAAG
3' ss Score
-2.29
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ATGACAAAGAATGGTACAGTGGAATCTGAAGAGGCTAATACATTGACACTGGATGACATTTCTGATGATGATATTGATCTGGACAACACTGAAGTAGATGAGTATTTCTTTCTACAACCCCTGCCAACAAAAAAGCGAAGGGCACTGCTGCGAGCTTCTGGAGTGAAGAAGATTGACGTGGAAGAAAAACATGAGCTACGGGCCATCCGGCTGTCCAGAGAGGATTGTGGCTGTGACTGCCGTGTGTTTTGTGATCCAGAAACTTGCACTTGCAGTCTTGCAGGCATAAAGTGTCAG
Seq A exon
AAGAATCAGTAGCCTGCAGATTTCACAAGG
Seq C2 exon
GTGGATCGTATGTCTTTTCCATGTGGTTGCACTAAAGAAGGGTGTAGCAATACAGCAGGTAGAATTGAATTTAATCCTATCCGTGTACGGACTCACTTTTTGCACACAATAATGAAACTTGAATTGGAGAAAAATAGAGAACAGCAAGTTCCGTCACTAAATGGCTGCCACAGTGAGATAAGTGCACACACTAGTTCTATGAGTCCGGGACCCCATCCGGTTGAATATTCAATTGCAGAAAATTTTGAGATTGAAACTGAACCTCAGGCTGCAGTCATGCATTCTCAGTCAGCCGAGGACTTGGACTGCCCTGGGGAAGAGGAGGAAGAGGAAGATGGGAGTAGCTTTTGTAGTGGAGTTACTGATTCTAGCACTCAGAGTTTAGCTCCTAGTGAATCAGATGATGATGAAGAGGAAGAGGAAGATGAGGAAGATGATGAGGAAGAAAAAGCAGATGACTTTGTAGAAAGTATGAGCTCCCATGCTGACATGGTGCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010971-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.131 A=0.000 C2=0.523
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF119423=Spt5_N=WD(100=27.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGTGTGTTTTGTGATCCA
R:
ACCTGCTGTATTGCTACACCC
Band lengths:
120-150
Functional annotations
There are 0 annotated functions for this event