GgaEX0016507 @ galGal3
Exon Skipping
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31601722-31604172:-
Coord C1 exon
chr2:31604016-31604172
Coord A exon
chr2:31602121-31602195
Coord C2 exon
chr2:31601722-31601852
Length
75 bp
Sequences
Splice sites
3' ss Seq
CCCCCACTGGATTCATAAAGGAA
3' ss Score
2.31
5' ss Seq
GTGGTTAGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GTGCCTTCAGTGTTTTCTGCCCCTATGAGACTACATGCTTCCAATCCTAACTTATCTACAATAGATTTTGTAGAAGAGAAAAACTACTCTGATGGCTCTGAAACATCATCAGAATTTACTAAAATGCAGGAGGACTTAGTTCATATTGCACATAAAG
Seq A exon
GAATGTGGAGTAGAGTCATGACCATCTGAAGATTCACGCTAATTGGGAAACAAAAGCATGTGAAGAGCAGACGTG
Seq C2 exon
TTTACTTCACCTTGAAGTCAGCTTTCAGCAGTATATCTACAGAGAGAGAAAAGCTGAAGCAGATGCTGGAGCATGAGGCATCATCATCTCCATCTGCACAAATAGTTGGCTTGAAGAATGCCTTAACATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007-'12-20,'12-19,13-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.000 C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGTGTTTTCTGCCCCT
R:
GCTGAAAGCTGACTTCAAGGTG
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]