GgaEX0016535 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr16_random:13055-13656:+
Coord C1 exon
chr16_random:13055-13327
Coord A exon
chr16_random:13408-13509
Coord C2 exon
chr16_random:13624-13656
Length
102 bp
Sequences
Splice sites
3' ss Seq
ACAACGGCGCTCTCCTCCAGAGC
3' ss Score
6.69
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AGCGGCCCAAGGTGCGAGTGTGGGGGAAGGAGGCCGACGGGATCCTGACTTTGTCCTGCCATGCTCACGGCTTCTACCCGCGGCCCATCGCCATCAGCTGGATGAAGGACGGCATGGTCCGGGACCAGGAGACCCAGTGGGGGGGCGTCGTGCCCAACAGCGATGGCACCTACCACGCCTCGGCTGCCATTGATGTGCTGCCGGAGGATGGGGACAAGTATTGGTGCCGCGTGGAGCACGCCAGCCTGCCCCAGCCTGGCCTCTTCTCATGGG
Seq A exon
AGCTGCAGCCCAACCTGATTCCCATTGTGGCTGGGGCGGTCGTTGCCATCGTGGCTGTCATTGCTGCGGTCATTGGATTGGTGGTGTGGAAGAGCAAGTCAG
Seq C2 exon
GGAAGGAGAAGAAGGGTTACGAAGCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011014-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
50%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTTGTCCTGCCATGCTCA
R:
GTGCTGCTTCGTAACCCTTCT
Band lengths:
257-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]