GgaEX0016644 @ galGal4
Exon Skipping
Gene
ENSGALG00000011110 | DPP4
Description
dipeptidyl peptidase 4 [Source:RefSeq peptide;Acc:NP_001026426]
Coordinates
chr7:20659488-20660136:+
Coord C1 exon
chr7:20659488-20659535
Coord A exon
chr7:20659677-20659759
Coord C2 exon
chr7:20660038-20660136
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCTTTATTTCTCCACTATAGTTA
3' ss Score
7.55
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GTCCTGGCCTGCCTATGTCTACTCTGCACAGAAGTAGTGATGATCAAG
Seq A exon
TTAACCACAAGGATAAAGTAAGGAGTTCAGCTTGCAGCTCTTAATACATTATTTAATATTATCTTACGCTGTGCTAGAAAATA
Seq C2 exon
TCCTCAGGTACTTGGAAAATAATACTGAACTGGAAAATTCACTGAAAGATATTCAAATGCCCTCAAAAAAACTTGGCTCCATTACTGTAGGAGGATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.214 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PD(1.4=29.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000018100fB1948
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGGCCTGCCTATGTCTA
R:
TCCTCCTACAGTAATGGAGCCA
Band lengths:
143-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]