GgaEX0017155 @ galGal3
Exon Skipping
Gene
ENSGALG00000011389 | TRAF3
Description
NA
Coordinates
chr5:52343752-52356471:+
Coord C1 exon
chr5:52343752-52343894
Coord A exon
chr5:52344757-52344857
Coord C2 exon
chr5:52356215-52356471
Length
101 bp
Sequences
Splice sites
3' ss Seq
GTAAATTCTTGTGCTTCAAGGTA
3' ss Score
5.37
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GGTGAAGAAAGAAACCGGGCAGACTAGCAAAGTTCTTTTTGTCAAGAGTAAAGAGAACCCTTACAGAACATTGAGAAAGTGCTTTTTTTCTCCTCTCTTCTCAAGCTACAGATCAAATGAGATTCAAATAAAACGAAGGAAAT
Seq A exon
GTAGAACTTCGATGTGATGGTTGAGGGCTTGAATGAAACTACTGATCAAAATTCACCAGATAAAAGGAGGCTATATAAAGGATAGTGTATGAATCCAAAAG
Seq C2 exon
AAATTATCTTAGAGCATGGACACCAGTAAGAAGACAGAACCCCCTTTATCTGTAGAAATGGTACAACAAAGGGCCAATCCTGATCGCAGTCCTTCAGCATCAATTTATGTTCCAGAGCAAGGTGGCTACAAAGAAAAATTTGTAAATGCTGTGGAGGATAAGTATAAATGTGAAAAATGTCACTTCATCTTATGCAATCCTAAACAGACTGAATGTGGACACAGATTCTGTGAGACTTGCATGAATGCCTTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011389-'4-7,'4-5,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.324
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139231=zf-C3HC4_2=PU(74.4=35.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGCAGACTAGCAAAGTTC
R:
GTAGCCACCTTGCTCTGGAAC
Band lengths:
258-359
Functional annotations
There are 0 annotated functions for this event