GgaEX0017182 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38475003-38486705:-
Coord C1 exon
chr2:38486624-38486705
Coord A exon
chr2:38481188-38481438
Coord C2 exon
chr2:38475003-38475146
Length
251 bp
Sequences
Splice sites
3' ss Seq
GCTCTCAAAATTATTTCCAGACT
3' ss Score
4.1
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GGTCATGATGAGGAAGCTGTCGTGGATATGGGCAAAATCAGCTCTACTATCAATACAAACTTTGAGAAAGAAGAACTAGAGA
Seq A exon
ACTGCCTTTTAAGAAGAAAATGTGGCAACCTTATTGTATAGACATAAAACTCAGGAGAGCACCCAAACTGACTGGACACAATTTTCAGCATTCATGTTATTGTCTCTGAAGGCAGAGAATTATTTCTAAGTTCTAGAAGAGTCTTTTAGGGAATATGCTTCTGATTCTGCCAACCTGAAAATTTTGGAGTTTACTTGTGTGTTACTGGAGCCCTTGAAGTTGCCTGAGCCAAGAGGAATTGTTTTTTATAA
Seq C2 exon
GCCACAGAGCTGTTTATATTGGCGTTCATGTCCCATTTGGAAAGCAGGGTCGTCGACGGCATAGACATCGTGGGCATAGACATCACAGAAGAAAAAAAGAAAAAGAAACTGATAGAGAAGATGGCAGAGAATCTCCATCGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'3-8,'3-7,4-8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.614 A=0.000 C2=0.694
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGGAAGCTGTCGTGGA
R:
CGTACGATGGAGATTCTCTGCC
Band lengths:
221-472
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]