GgaEX0017232 @ galGal3
Exon Skipping
Gene
ENSGALG00000011439 | RBMS3
Description
NA
Coordinates
chr2:39469635-39520587:+
Coord C1 exon
chr2:39469635-39469714
Coord A exon
chr2:39477037-39477081
Coord C2 exon
chr2:39520481-39520587
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCTTCTCTTTTCCAGAGT
3' ss Score
11.34
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AATGGAGTCTACAGAAAAATGTGAAGTAGTAATTCAGCATTTTAATGGCAAATATCTGAAAACCCCGCCTGGTCTACCAG
Seq A exon
AGTTATGTTTATGTAACCAGTTGTTCTTGCTGAGCTGCCATTCAG
Seq C2 exon
CCCCCACTGAGCCTTTACTGTGCAAATTTGCTGATGGAGGGCAAAAGAAGCGCCAGAATCAAAGCAAATACACACAGAATGGAAGGCCGTGGCCCAGAGAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.759
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(32.8=78.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTGAAAACCCCGCCTGGT
R:
CTCTCCTTCTCTGGGCCACG
Band lengths:
135-180
Functional annotations
There are 0 annotated functions for this event