GgaEX0017897 @ galGal3
Exon Skipping
Gene
ENSGALG00000011894 | F1NJG4_CHICK
Description
NA
Coordinates
chr1:51297474-51299256:+
Coord C1 exon
chr1:51297474-51297615
Coord A exon
chr1:51298222-51298409
Coord C2 exon
chr1:51299115-51299256
Length
188 bp
Sequences
Splice sites
3' ss Seq
CTAAGCTGTGCTGCTTCTAGGTA
3' ss Score
7.54
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGTAAGGAGGCTGAAGAGAATGGTTTCAATAAAAGCAACCTTACTCTGGTGACCGCAGACTTACTTGTAGCTGGTTCTGAGACCACCGCCACCACCCTCCGATGGGCGTTCCTGTTCATGCTTTTGTACCCAGAAATACAAA
Seq A exon
GTAAAGTCCACAAAGAGATTGATAAGGTGATTGGAAGAAACCGACCGCCCACCATGGCAGACCAAGTGAACATGCCCTACACCAATGCCGTCATCCATGAAGTACAACGCTTTGGGGACGTTGTTCCTATGGGACTACCTCACATGACATACCGGGACACTGAGCTTCAAGGTTTCTTCATTCCCAAA
Seq C2 exon
GGGACGACAATCATCACCAACTTGACTTCAGTACTTAAGGATGAGACGGCCTGGAAGAAGCCAAATGAATTTTACCCTGAACACTTTCTGAATGAGAATGGGCAATTTGTGAGACCAGAGGCCTTCTTGCCCTTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
PF0006717=p450=FE(13.5=100)
C2:
PF0006717=p450=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTTACTCTGGTGACCGC
R:
CTGCAGAGAAGGGCAAGAAGG
Band lengths:
249-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]