GgaEX0018759 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33727441-33731638:-
Coord C1 exon
chr7:33731510-33731638
Coord A exon
chr7:33729993-33730180
Coord C2 exon
chr7:33727441-33727541
Length
188 bp
Sequences
Splice sites
3' ss Seq
AACACAACTTTTCTTTGAAGGAA
3' ss Score
6.68
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
ATTTGAATGAATGTAATACATATGGAAGCTGCAGCCAGATGTGTGTGAATACGGATGGATCTTACACCTGTAGCTGTGTAGAGGGTTACGTTCTTCAGCCTGATAACAAATCTTGCAAGGCCAAAAATG
Seq A exon
GAATTAAATCATCAATATTTGAAGAATTGGGCTGAACTCTTCGCAGTGCACTGAGGTCAAAAAAATTGTTGCCACAATAATGATGCCACAGAAAGCAACAAGAGCTCTAGTGACCTATAACAGCTTATGTTGCTTCACTGCACCCAGCTTACAGTGTGGAAAATAGTGACATTTCCATGTTCCAGAAG
Seq C2 exon
AAAACCACAGCAAACCCATCCACCAGCACTGGCATTTCTGAAGATTCCCTTCCGCAGAACCAGAACTGTTGGTGGCGGAGCAAAAAGTCTTTGTTTCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'8-14,'8-13,10-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(12.5=6.8),PF146701=FXa_inhibition=WD(100=81.8)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATACATATGGAAGCTGCAGCC
R:
CAAAGACTTTTTGCTCCGCCA
Band lengths:
210-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]