GgaEX0018782 @ galGal3
Exon Skipping
Gene
ENSGALG00000012418 | F1NDY5_CHICK
Description
NA
Coordinates
chr7:34286861-34294162:+
Coord C1 exon
chr7:34286861-34287007
Coord A exon
chr7:34291121-34291186
Coord C2 exon
chr7:34294064-34294162
Length
66 bp
Sequences
Splice sites
3' ss Seq
AGGCTATTTTTCCATCTTAGGTC
3' ss Score
8.11
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGGGAGGAGACCTTGAGGATTGAAGATATTCTTGCTGTGATTGAGGAGGAAGGGGACTCTATTGCTGTCATTCTGTTCAGTGGGGTGCAGTACTACACGGGCCAGCTGTTTGACATCCCTAGAATAACAAAAGCTGGCCAAAAAAAG
Seq A exon
GTCTCTCAGATAAATCAAAATTACAGCGTATTGTGCGAGACACCCATCAGCAGGCTGAAGGAGGAT
Seq C2 exon
GGTTGCTTTGTTGGATTTGACCTGGCTCATGCTGTTGGGAACGTAGAGCTCTGTTTGCATGACTGGGGAGTGGATTTTGCATGCTGGTGCACCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418-'11-9,'11-7,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(14.5=100)
A:
PF0026614=Aminotran_5=PD(1.7=13.6),PF0026614=Aminotran_5=PU(6.0=45.5)
C2:
PF0026614=Aminotran_5=FE(19.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGGAGACCTTGAGGATT
R:
GCATGAGCCAGGTCAAATCCA
Band lengths:
179-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]