GgaEX0018784 @ galGal3
Exon Skipping
Gene
ENSGALG00000012418 | F1NDY5_CHICK
Description
NA
Coordinates
chr7:34277027-34282486:+
Coord C1 exon
chr7:34277027-34277109
Coord A exon
chr7:34281467-34281761
Coord C2 exon
chr7:34282425-34282486
Length
295 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTCTATCTCCATCAGAGT
3' ss Score
8.58
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
AGGTGTTCATGGCCATTTCAACGGGCAGCGTCCATGGGCTCAGGCGGATGAATGCATTGTGGACTTGATGGCTGAACTGGTGG
Seq A exon
AGTGGCTGCTGCCCTCCTTGCCTCCTTGCATTTGCCTTCATCGCTCAGCCTCTTTCCACCCTCAGCAAACTCCACTGATGGGTGATGATTACAACAACGTGCACAAGCCCATCTTCCTTCCAGCTGAAGAGAACTCTCAAAGCACTGATTTGTCAAGGGTGAATTACTGCTTTTCAACAACAGACATCAGGCAAAACAGAAAGAAATAGGAATTGATTTTCTCCATATCTCAACACAGTGCTTTGCCTTAGAGTCCCTCATCCTGCCTGAAACCTCTCACCAGTGGTTGATAAAG
Seq C2 exon
GTGCTCAAAGACATGAGGTAGCCTTAATGAATGGACTAACTGTTAACTTGCACCTTCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418-'5-3,'5-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(15.6=100)
A:
NO
C2:
PF0026614=Aminotran_5=FE(11.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATGGCCATTTCAACGGG
R:
CATCAGAAGGTGCAAGTTAACAGT
Band lengths:
141-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]