GgaEX0018829 @ galGal4
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr7:34166127-34171659:+
Coord C1 exon
chr7:34166127-34166307
Coord A exon
chr7:34168137-34168244
Coord C2 exon
chr7:34169521-34171659
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCTGTCATGATGTAGCTG
3' ss Score
7.09
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTCTTTAATTTTGATCCTGGAGCTGCTGTGAAGCAGAGAACTGCTGAAGATGTTAAAGCAGATGAAGATGTCACCAAACTATGCATACATAAAAGAAAGATTATTGCTGTGGCTACACTTCATAAAAGCATGGAAGCACCACATCCTTCACTAGTTCTAACTAGTCCTGGTGGTGGAACAA
Seq A exon
CTGGTTCAGCAAATAGGATGAAGGCAGGATTTTCAGTGCCATCTGTCTCCTATGGCCGGAGAGAAGGAAAGAAGGGAATTGAGTTCTTGTGTGTAGGAGAATTTAAAG
Seq C2 exon
GTGCAACTCCGGTAGTTCCTACTCGAGCAGCAACTCCAAGATCAATGAGGAATAAATCACATGAAGGAATTACAAATTCTGTGATGCCAGAATGTAAGACTCCTTTCAAGTTGATGATAGGGGCATCTAATGCCATGGGTAGGCTTTATGTGCAAGAAATGGCTGGAAGCCAGCAACAAGAACTTCATTCTGTCTATCCTAGGCAGAGATTGGGTAGTAATGAACTTGGACAGAAGTCTCCATATCGTGGCAGTCATGGTGGGATGCCCAGTCCAGCTTCATCAGGATCACAGATATATGGAGACGGCTCAATCTCTCCTAGGACTGACCCACTTGGAAGCCCTGATGTTTTCACAAGGAACAATCCCAGTTTTCATGGAGCACCCAACTCAAGTCCTATTCATATGAACAGGACACCTCTGTCTCCGCCATCAGTAATGCTACATGGTTCTCCCATACAGTCATCCTGTGCAATGGCTGGAAGGACTAATATACCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449_MULTIEX1-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.317 A=0.162 C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020351fB2242
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCACCACATCCTTCAC
R:
AGAATGAAGTTCTTGTTGCTGGC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]