GgaEX0019084 @ galGal3
Exon Skipping
Gene
ENSGALG00000012617 | Q06900_CHICK
Description
NA
Coordinates
chr2:57071487-57079390:+
Coord C1 exon
chr2:57071487-57071616
Coord A exon
chr2:57078267-57078308
Coord C2 exon
chr2:57079139-57079390
Length
42 bp
Sequences
Splice sites
3' ss Seq
TATTCTCACTTCTGTTTCAGGGC
3' ss Score
11.09
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
ATTTCTCGCGCGGGAGTGCGCGCACTGGGTCTGCGGGTTCAGGACCGGACTATGGCGTTACGGGGCACTCGGCGGCTCCGGGCCCTGCTGCGCCTGCTGGTAGCCGCGGTCCTGCTGCCCAGGGCGGCCG
Seq A exon
GGCCATCATGCAGCTTTTCCTCTACTCAGATGAACAAGTAGG
Seq C2 exon
CATTACAATGTTACTGCCATCTATGCACAAAGGACAACTTTACCTGTGTGACAGATGGGCTTTGTTTTACCTCTGTAACACGGACTGCAGATAGAGTCATACGCAATAGCATGTGTATAGCAGAAATTGATCTGATTCCTCGAGACAGGCCATTTATTTGTGCACCATCCTTCAGAGATGGAGTTACTACTTTGCCTCATTGCTGTGACAGAGACCACTGCAATAAAATAGAACTTCCAATTCCAACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012617-'0-1,'0-0,5-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.385 C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0106418=Activin_recp=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGACTATGGCGTTACGG
R:
AGCCCATCTGTCACACAGGTA
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]