GgaEX0019675 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:77995534-78016323:+
Coord C1 exon
chr2:77995534-77995618
Coord A exon
chr2:78002067-78002192
Coord C2 exon
chr2:78016197-78016323
Length
126 bp
Sequences
Splice sites
3' ss Seq
GATTGATTGATTTATGGCAGTGG
3' ss Score
2.62
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
GCATTCGCCAAAAGTGGTGAAAGCAGCATCTCAGGTCCTCAATAGTATGTGGCAGTACAGAGACCTGAGAAGTCTCTACAAGAAG
Seq A exon
TGGGCGGCCCCAAGCTTCAGTGTGGCTGAGGACAGAGGATTTTCACCAACCCACCACTCTGGGTCATGGCACGCTCAGCAAACTCTCTCCCAGAGCCAAGAAACCAGAATCTATTCCCCATCCCAG
Seq C2 exon
GACGGATGGTCACAGTATCACTTTGTAGCCTCATCTTCAACGATAGAAAGAGATCGGCAAAGACCATACTCTTCATCACGCACGCCCTCCATCTCTCCCGTGCGCATGTCTCCTAACAACCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013001_MULTIEX2-4/8=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=0.667 C2=0.709
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAAGTGGTGAAAGCAGC
R:
AGCGGTTGTTAGGAGACATGC
Band lengths:
202-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]