GgaEX0020001 @ galGal3
Exon Skipping
Gene
ENSGALG00000013295 | BRD4
Description
NA
Coordinates
chrUn_random:28092680-28098939:-
Coord C1 exon
chrUn_random:28098845-28098939
Coord A exon
chrUn_random:28094260-28094376
Coord C2 exon
chrUn_random:28092680-28092998
Length
117 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGTTTGTTTCATCAGATA
3' ss Score
8.72
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
ATCTTTCTTCCTGCGGTAGCCTCAAAAATGGAGGTGGGAGGGCTTGGCTGGTGAAGGAGCAGCACCCGACACCTCAAAGGGTCGAAGGATTTAAG
Seq A exon
ATACACAATCTAAAGGCATTTGTGCCTGAAGCCACGGAAGATAGATGGACAAGCCAAGCAACTTCTGACCCTGCATCATTTTCTGGGGCAAAATTGTATGGCAATGTATCCTACAAG
Seq C2 exon
GGTGTCTGGTGAGGAATGCAATGGGATCAATAGCATGTCTGCAGAGAGCGGCCCCGGGACGAGACTGAGAAATCTGCCAGTGATGGGCGACGGCCTGGAAGCCACACAGATGTCGACGGCGCAGGCGCAGGCGCAACCCCAGCAAGGCAGCACCGTCGGCGTCAACCCCCCTCCTCCAGAGACCTCCAACCCCAACAAACCCAAGCGGCAGACCAACCAGCTGCAGTACCTGCTCAAAGTGGTGCTCAAAACGCTATGGAAGCACCAGTTTGCGTGGCCTTTCCAGCAGCCCGTGGATGCTGTCAAGCTGAATCTCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013295-'3-2,'3-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.621
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0043920=Bromodomain=PU(32.6=29.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTCAAAGGGTCGAAGGA
R:
GTACTGCAGCTGGTTGGTCTG
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event