GgaEX0020126 @ galGal3
Exon Skipping
Gene
ENSGALG00000013454 | F6VFN9_CHICK
Description
NA
Coordinates
chr27:3638416-3641316:+
Coord C1 exon
chr27:3638416-3638725
Coord A exon
chr27:3640754-3640894
Coord C2 exon
chr27:3640991-3641316
Length
141 bp
Sequences
Splice sites
3' ss Seq
AGTTTCATGGCACTTCGCAGGGA
3' ss Score
3.57
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
Exon sequences
Seq C1 exon
CACCACCAGCTCTACCTCGGCCAGCAGGACGCGGACGGCGTGTACTTCCAGGCGGCCGGGTACTCCTCCAGCACCGGACCCCACCTCGGCTCCCTGGCAGAGGGCTATTGTGGGGCCGTAGGGCAGTACCAGCAGCAGCAGCACCTTTACGGGCAGGAGCAGCCCGGTTACTTGCCCGGGGTTTACGGCAACCTCTCGCCTTCCCTAAATGAGGACAAAGACCCCGCGTGCCCCTCCGAGCCGTGCCCCAATGCCAGCGCGGCGCGGACCTTCGATTGGATGAAAGTGAAGAGGAACCCCCCCAAGACAG
Seq A exon
GGAGCTGGGAGGACCGTTTGCAAGAGAAAGGAGCAGCTCTGCAAATCCCGGGGCAGCATTTCCCTCCGGGTTACGTCCCTGGAAAGTCAGGGGTGGCTCAGGAGAAGCTGCGAGAGGTGGGGGCCCAACACGCAGCAGAGG
Seq C2 exon
CCAAAGTGTCGGAATACGGGCTGCTGGGCCAGCCCAACACCATTCGCACCAACTTCACCACCAAGCAGCTGACGGAGCTGGAGAAGGAGTTTCACTTTAACAAGTACCTCACCCGGGCCCGGAGGGTGGAGATCGCCGCTACACTGGAGCTCAACGAAACCCAAGTCAAGATCTGGTTCCAGAACAGGCGGATGAAACAGAAGAAGAGGGAAAAGGAAGGTCTCGCCCCTCCTGCTGCCTCCAGGTCCGCGAAGGAAGCGAGTGAAGCCTCGGATCAGTCCAACTGCACCTCACCTGAGGCCTCCCCCAGCTCCGTGTCCTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013454-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.389 A=0.788 C2=0.553
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=WD(100=52.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGACCTTCGATTGGATGAA
R:
TGTTTCATCCGCCTGTTCTGG
Band lengths:
246-387
Functional annotations
There are 0 annotated functions for this event