GgaEX0020287 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52226342-52229060:+
Coord C1 exon
chr3:52226342-52226425
Coord A exon
chr3:52227718-52228035
Coord C2 exon
chr3:52229016-52229060
Length
318 bp
Sequences
Splice sites
3' ss Seq
TACTCCCTTCTTGTTTATAGGCT
3' ss Score
7.06
5' ss Seq
ACGGTATAT
5' ss Score
6.07
Exon sequences
Seq C1 exon
TTGTACTCGCTGAATGATTATAAGCCACCCATTTCTAAAGCTAAAATGACACAGATCACCAAGGCAGCAATCAAGGCTATAAAG
Seq A exon
GCTCCCTTCAGGTACTGAAAGGCTGCAATGAGGTCACCCCACAGCCTTCTCTTCTCCGGGCTGAATAAGCCCAGCTCCCTCAGCCTGTCCTCGTAGGGGAGGTGCTCCAGCTCCCTGATCATCTTTGTGGCCCTCCTCTGGACCCTCTCCAACAGCTCTCTGTCTTTCTTGTACTGGGGGCTCCATACCTGGACACAGTACTCCAGATGGGGCCTCAAAGACCTTAAAGATCATGAAGTCCAACCACAACCTAACCATGCTACCCTAACAACTCTGCTAAATGATACCAGAATCTTGGAAGCCTTGAAATGGATAACG
Seq C2 exon
TTCTACAAGCATGTTGTGCAGAGTGTTGAGAAATTCATTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'2-5,'2-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event