GgaEX0020288 @ galGal4
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr3:49612588-49615609:+
Coord C1 exon
chr3:49612588-49612718
Coord A exon
chr3:49615121-49615272
Coord C2 exon
chr3:49615433-49615609
Length
152 bp
Sequences
Splice sites
3' ss Seq
GGCTAACAGATTTTTTTCAGGTC
3' ss Score
2.9
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAACACCTGTGACTCCAGTTACTCCTGCCAATGTGGTGCAAAGTTTACCTGATCCTTGGGTGTCTCAGATTGCTAATACAGATACGCTTGCTGCTGTAGCCCAGATTTTACAGAGTCCCCAAGGCCAACAG
Seq A exon
GTCAGAAGGAATCAAACTGGAGAAGCAGAAGAGAGGGAAACCTAGAAAACAGGAAATCCTGAGTGGTGACTGGTCATCATGCAACCTGTCAGAGCAAGTTAGGAGGAAGAAGCATCTGCATGTCTTATCAGCCACTGAAAACAAATTGGCCT
Seq C2 exon
CTTCAGCAGTTGATACAAACGCTGCAGATACAGCAGCAGAAACCTCAGCCTTCACTACTTCAAGCCCTGGATGCTGGTCTTGTCGTTCAGTTACAGGCCCTAACTGCACAACTTACAGCTGCAGCTGCTGCTGCCAATACACTTAATCCGTTGGAACAGAGTGTCTCTTTTAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635_MULTIEX1-2/13=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=1.000 C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000022182fB2454
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCCAGTTACTCCTGCCA
R:
TGCAGCTGTAAGTTGTGCAGT
Band lengths:
245-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]