GgaEX0020307 @ galGal4
Exon Skipping
Gene
ENSGALG00000013646 | VPS37A
Description
vacuolar protein sorting 37 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr4:62736914-62745436:-
Coord C1 exon
chr4:62745393-62745436
Coord A exon
chr4:62744790-62744868
Coord C2 exon
chr4:62736914-62738101
Length
79 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTTTTGGATAAGCAGATT
3' ss Score
2.65
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GTTTCCTGCAAATGACATCTGCCAACAGAAGAGTGACAAACCCA
Seq A exon
ATTCTGGATTAAGCAAAGGTTGTGTTGGAACAAACTATATTGGAAACAAAATGGAATGAATGATCTCCGTGTAGATTTG
Seq C2 exon
GCCACAGACAATTCCCATCCTTCATCCGATTAAAAGTTGTTGCTCCAGACCATGAGGGACTCAGCTGCATCGAGATCCTTGCTGCTCTGAAGGCATTTCAAACTGCCAGGCATACAGCTTCATCTGAATCCTTGCCACTGTCTTCACTAGGCAAACAGCCACCCGCACTTGGGGACCTACAGCTTAAGTCCTCCACCCCAGACTCCTGGTCACTGTTAGCTGAGAGGTCAGGATCAGAGCTTTTCAGGTTGTCCTGTGTCAAAATCAAGGCTGAATCTTCTTCATCCCCTTGAGAAGGGCTCCGGGATGGGAATGATTTCAGATCATTGCTGTACTCTTGGGGAGTGTTAGCTAAGCTGTTGCTGGAAGCAGAAAGCGCTAACTCCTTGCTTCGGTCTTGCTGCTTACTCTTGACTTTATTACCATTTAATTGCAATTTTTGAAGATTTGCCAATCTCTGAAATAAAGAAGAGAGTATATATTACATGCACACATTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013646_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGCAAATGACATCTGCCA
R:
AGATGAAGCTGTATGCCTGGC
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]