GgaEX0020950 @ galGal3
Exon Skipping
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18092410-18095038:+
Coord C1 exon
chr7:18092410-18092511
Coord A exon
chr7:18094682-18094812
Coord C2 exon
chr7:18094905-18095038
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTCTATTAAACCTTTGAAGGAA
3' ss Score
6.39
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GTTGCTGTTCTTGTCAAGCAGCAAATGAGGAAATATCCTGTGCTAAGGACGGCAAAGCAGTGCCAAATGCTGCTGAAAACAAGGTTCCTTCAATTGAGACAG
Seq A exon
GAAGGATTCTGTTGTGAAGTTTCTTCATTTTAGGAACACACACAAACTGTTCCATTTGAGGATAGATGTCTGAACTGTTGTTATCAAAGCTAACACTATGTGTGTAGGACTTCAATACAAACACTTACAAG
Seq C2 exon
CTGATCAGTGTGTGAATCAGTGCAGTGCTCAGACCTGCGTACTGGCTCAGGAAGAACAGCTTCTACAGACTGGAGACAAACAGCTGGCCAGACATGTGCTGCTGTGCTTGCTTCTTGTTGTTGGCCTTTTTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209-'17-18,'17-17,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTCTTGTCAAGCAGCA
R:
AGCAAAAAGGCCAACAACAAGA
Band lengths:
234-365
Functional annotations
There are 0 annotated functions for this event