GgaEX0020951 @ galGal3
Exon Skipping
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18094905-18096320:+
Coord C1 exon
chr7:18094905-18095038
Coord A exon
chr7:18095196-18095327
Coord C2 exon
chr7:18096225-18096320
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTCTCCTATTGTAGGAG
3' ss Score
10.07
5' ss Seq
TGGGTAATT
5' ss Score
6.19
Exon sequences
Seq C1 exon
CTGATCAGTGTGTGAATCAGTGCAGTGCTCAGACCTGCGTACTGGCTCAGGAAGAACAGCTTCTACAGACTGGAGACAAACAGCTGGCCAGACATGTGCTGCTGTGCTTGCTTCTTGTTGTTGGCCTTTTTGCT
Seq A exon
GAGGTGTATCATAAGATTAATTTATTGTGTGGCACAGAAAAATTAAAGGCAAGTTAAGGCCAACAGTGTCAGTGAGCAAGCTTCACTGGAGAACCCCAAAGGGACAGGAAAAAATTGGAATCACATCATTGG
Seq C2 exon
AATCTTTCCAGTTGTTTATGGTGGCTGTTCAACCAAGAACCTGGAAGACTGTATGTGGAATTGCAGTTCTTTTGTGCTGTGTTTAATTTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209-'20-20,'20-19,21-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGTGTGAATCAGTGCAGT
R:
CTGACCAAAATTAAACACAGCACA
Band lengths:
226-358
Functional annotations
There are 0 annotated functions for this event