GgaEX0021113 @ galGal3
Exon Skipping
Gene
ENSGALG00000014370 | SEL1L3
Description
NA
Coordinates
chr4:75854446-75855776:+
Coord C1 exon
chr4:75854446-75854573
Coord A exon
chr4:75854752-75854850
Coord C2 exon
chr4:75855693-75855776
Length
99 bp
Sequences
Splice sites
3' ss Seq
AGTTTTATTTAAATTACCAGTAG
3' ss Score
2.24
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
ACAGTAGCTGCACAATATTTCTATAAAGCTGCTCAAGGAGGACATATAGAAGGGACTTTACGATGTTCTCTGTACTACATCACGGGAAATATGGAAGAATTCCCCAGAGATCCAGAAAAAGCTGTAAT
Seq A exon
TAGATTTTGAGAGACGCTGAGTACTTTTGGTGGACTTTCAGATGCACCCAAGTACACTGGCTCTTTGAGTTGATCCAAAGGCAGGAAAAGAAAACGCAG
Seq C2 exon
CTGGGCAAAGCATGTTGCGGAGAAGAATGGCTATTTAGGTCATGTCATTAGAAAAGCACTCAATGCTTATCTGGAACTTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014370-'16-25,'16-24,17-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(35.9=32.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGCTGCTCAAGGAGGACA
R:
TGAGTGCTTTTCTAATGACATGACCT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event