GgaEX0021331 @ galGal4
Exon Skipping
Gene
ENSGALG00000014624 | CERS3
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
Coordinates
chr10:16807613-16809456:-
Coord C1 exon
chr10:16809275-16809456
Coord A exon
chr10:16808511-16808594
Coord C2 exon
chr10:16807613-16807730
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTAATCTATTTCAGGAT
3' ss Score
10.82
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ATGGCACATATATTAAAGACGCTCAACAGCTGGTTCTGGTGGGAGAATATTTGGATGCCAATCAATTGCACATGGGCAGATTTTGTAGACCGTGATGGCCTTGTCTTTCCAAAACCACAACAGTTGTATGCCACAATACCATATGCTTTTGTATTGCTGATTATCCGATTCTTCACTGAAAG
Seq A exon
GATAGAATGAGGAAACTTGGAGTGTCATAAGTTGGACAGACTTGAGGCAAAACCAGATAAAATCATTCATATTAGAGATCAGAG
Seq C2 exon
ATACATTGCTATTCCTCTAGCAAAAGCCTTAGGTATAAAGAATGTAAGACGTGTGAAGCCGCAGCCTAATCCTGTTTTAGAGAGTTATTTCCGGGAGTGCTCAAGACATCCATCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014624_MULTIEX1-1/10=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=PU(47.3=65.0)
Main Inclusion Isoform:
ENSGALT00000023574fB2600
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACCGTGATGGCCTTGTCT
R:
AAAACAGGATTAGGCTGCGGC
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]