GgaEX0021444 @ galGal3
Exon Skipping
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55707099-55709930:-
Coord C1 exon
chrZ:55709805-55709930
Coord A exon
chrZ:55709252-55709321
Coord C2 exon
chrZ:55707099-55707326
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACTTCATCTTTGTTGTGCAGGAC
3' ss Score
8.47
5' ss Seq
TAGGTATTA
5' ss Score
4.71
Exon sequences
Seq C1 exon
ATGTAAATGAGTGTGATGTTTTTCCTGGTGTTTGTCCCAATGGACGATGTGTTAACAGTAGAGGCTCATTTCATTGTGAATGCCCAGAAGGACTGACGCTGGATGGAACAGGGCGAGTGTGTTTAG
Seq A exon
GACACGTATCTTCTACAGACAAAACATGATGTCAGTGAAGACATAACGTCCTCTACAAAAAAAGCTTTAG
Seq C2 exon
ATATTCGCATGGAGCAGTGTTACCTGAAATGGGATGAAGATGAATGCATTCAGTCTGTACCTGGCAAATTTCGTATGGATGCCTGCTGCTGTGCTGTGGGTGCTGCCTGGGGCTCTGACTGTGAGGAGTGTCCAAAGCCTGGCACAAAGGAGTATGAGGCTCTGTGCCCCAGAGGTCCTGGCTTTTCCAACAGAGGAGATATTCTAACTGGCAGACCATTTTATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'27-31,'27-30,28-31
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
NO
C2:
PF0068312=TB=WD(100=54.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACTGACGCTGGATGGAA
R:
GGCTTTGGACACTCCTCACAG
Band lengths:
178-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]