GgaEX0021521 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:77919827-77922962:-
Coord C1 exon
chr1:77922876-77922962
Coord A exon
chr1:77922457-77922611
Coord C2 exon
chr1:77919827-77919939
Length
155 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTCTCTGATTTTTAGAAA
3' ss Score
8.8
5' ss Seq
ATGGTACAG
5' ss Score
3.5
Exon sequences
Seq C1 exon
TTTTTCAGACATACAAGGATCCTGAAGAAGGAAAGAAGCTGCAGGCCATGAGGGAAGCACTGTGTTTTGAAAGGAGGGCAAATAATG
Seq A exon
AAACAGAATGCGCTCTCTGTCCAGCAAGGTGGAAAAGCAGTGAAGCTGGCAGCTGCTTCTACGTTTCAAAGCAGAAGAAAACATGGAAAGAAAGCCAGGAGTTCTGTTCCACAAGAAACTCCACTCTTCTTGTGCTGAAAGACAAAGTGAAGATG
Seq C2 exon
GTCTCTCTGCCATATGATTCACAGTTTTATTGGGTTGGATTATCATACATATCTGAAAGGAATGGCTGGTTCTGGGAGGATGGAACAGCTCTTTCAACTGAAGCCAAAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014722_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=PU(41.5=51.9)
C2:
PF0005916=Lectin_C=FE(55.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACATACAAGGATCCTGAAGA
R:
AGTTTTGGCTTCAGTTGAAAGAGC
Band lengths:
194-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]