GgaEX0022191 @ galGal3
Exon Skipping
Gene
ENSGALG00000015123 | ZDHHC23
Description
NA
Coordinates
chr1:86363318-86364628:-
Coord C1 exon
chr1:86363934-86364628
Coord A exon
chr1:86363739-86363822
Coord C2 exon
chr1:86363318-86363485
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTCCCCAGACC
3' ss Score
12.33
5' ss Seq
GGGGTATGA
5' ss Score
5.41
Exon sequences
Seq C1 exon
ACATCGCTTCCCGCCGTGGTGCTGTGGTATTACTACCTCACCCACAGGAGGAAGGAGCGGACTCTTTTCTTCCTGAGCCTGGGACTGTTCTCCCTGGGCTACATGTACTATGTTTTCCTGCAGGAGGTGGTTCCTCGAGGCCACGTGGGGTATTCCCAAGTGGCACTTCTTACCTGTGGGCTAATTCTTATGCTTGTGGCTTTGTCGCGAGCCAAGAAAGACCCTGGCTACCTTCCCATCTCAACAAGTGTTGACAAGCCATCGCAGCAGGCTTTTCCCAGCAAGAGTGTTCGAGGGAGCTCCAATGGGCTCCATGGAGCTGCTGCCGGTGGCCATTCTGTGAATGGGGAGACCAAAGGCTACTCCAGAGTGCTGGCTGAGGAGCGAGAAGGTGTGAAAATGGACTGGTGTGTCAAGTGCCAGCTGGTCAGGCCGGCCCGGGCAGGGCACTGCCGGCTGTGTGGCAGGTGTGTGAGGAGACTGGATCATCACTGTGTCTG
Seq A exon
ACCCTATGAAATGGGCTTGCTTTTCATGTGTGGAGGGAACCTAAAGCTGTCATCGCTACAGTATTGTAACCAAGGAGCAGCGGG
Seq C2 exon
GATTAACAGCTGTGTAGGGGAGCAGAACCACCAAGCATTCATCCTTGCACTGTTCTTCTTCATGCTCACCTCTCTGTATGGAATTATGCTGACTCTAGACACCATCTGTAGGGGACGAACCCCATTCACAGCATTGTTCTACTGCCCTGGGGCCTATTCTGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015123-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0109814=FTSW_RODA_SPOVE=WD(100=40.5),PF0152915=zf-DHHC=WD(100=44.4)
A:
NO
C2:
PF0152915=zf-DHHC=FE(27.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGTGTGAGGAGACTGGA
R:
ATGCTGTGAATGGGGTTCGTC
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]