GgaEX0022806 @ galGal3
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82840366-82854233:+
Coord C1 exon
chr4:82840366-82841015
Coord A exon
chr4:82849435-82849681
Coord C2 exon
chr4:82854113-82854233
Length
247 bp
Sequences
Splice sites
3' ss Seq
AAGTTGATTTTGCATTCCAGTTT
3' ss Score
4.48
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGAAATCCAGAGCCCGTTCACTGCAATGTGCTAACTGCGAAGAGGAAGCAGTCAGAACCTGAAATTGTGCCTGACAGAACTTTTCAGAGCGCGTGTACACTGCCGTCCTATGTGCCTCCACGGCCTCTGACTTCTGAACACGATCACGCCGTGCGAAAATCCTCTACTTTTCCAAGGACTGGGTATGACACTGTCAAGCTTTACAGTCCGACTTCAAAAACACTGAATCGAAGTGATGATATCTCTGTCTGTAGTGTTTCTAGTCTTAGCACAGAACTGTCAACAACTTTATCAGTCAGCAACGAGGACATTTTGGACTTTGTGGTCACAAGCAGTTCGAGCGCAATTGTGACTCTGGAGACTGATGAAGCACACTTCTCAGATGTCACCCTGAGTTCCACTAAGGAGACCAATGAACAAAGTCAGCAGGACTGTTGTCAAGAGACAGAAGTGGACAGTAGACAGAAAATATTGGGACCTTTCACCAACTTCCTTGCCAG
Seq A exon
TTTGCCTTTACGTAGACTGAGGAGCTCAAGACCTGAGTGATCTCTTCACACTTAATTTGGAGAAATGGGAAATTTCAGGATCTTCCTCCAGAAGCAGCTGAAGGAAATACGATTTGCCTCTTAAGAGTACCCACAAGTTTGATACCCATTTGAAATTACTTCTGAAGATAATTCTGTTGTACAAAATCTGAACCTTCTGAACTGACTTCATTGCCCTTATCTTTCATCTGTTCTCTTCATAAGGCTG
Seq C2 exon
GAATTTGTTTACCAGGAAGCAAAATGCAAGATCTGAAAAACAAAATGATGTGGGCTGGAAGTTGTTTGGAAAAGTACCCCTCAGAGAAAACTCACAGAAAGATCCTAAAAAAATACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.498 A=0.308 C2=0.317
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAGAACTGTCAACAACT
R:
TCCAAACAACTTCCAGCCCAC
Band lengths:
303-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]