GgaEX0022885 @ galGal3
Exon Skipping
Gene
ENSGALG00000015597 | CPZ
Description
NA
Coordinates
chr4:84166265-84167482:+
Coord C1 exon
chr4:84166265-84166366
Coord A exon
chr4:84167081-84167115
Coord C2 exon
chr4:84167321-84167482
Length
35 bp
Sequences
Splice sites
3' ss Seq
GTTGCTCTGTGTTGAGTAAGAAA
3' ss Score
-5.11
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TATCTTCTGGGGAACCCTCGCATCCAAACTTTGATCAATAACACCAGAATTCATCTCCTGCCTTCACTCAACCCAGATGGGTATGAACTGGCTGCAGAAGAG
Seq A exon
AAACTGCTGTGCTCCTCTCATGAGTCACATCACTG
Seq C2 exon
GGTGCTGGTTACAATGGATGGGTGATTGGCCGGCAGACAGCTCAGAACTTGGACCTGAACAGAAATTTCCCTGATCTGACTTCAGAAGCTTACAGAAGAGCTGGGATTCGTGGGGCCCGCTTGGACCATATCCCCATTCCACAATCCTACTGGTGGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015597-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
75%=100=50%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(11.0=100)
A:
PF0024619=Peptidase_M14=FE(9.2=100)
C2:
PF0024619=Peptidase_M14=FE(17.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCCTCGCATCCAAACTT
R:
GGCCAATCACCCATCCATTGT
Band lengths:
123-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]