GgaEX0023164 @ galGal3
Exon Skipping
Gene
ENSGALG00000015787 | RNGTT
Description
NA
Coordinates
chr3:78568065-78575992:+
Coord C1 exon
chr3:78568065-78568174
Coord A exon
chr3:78571323-78571422
Coord C2 exon
chr3:78575889-78575992
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGATTTCCTTTTTTTCTAGGAG
3' ss Score
10.5
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GGAAGTTTTTACCTTTGAAGACAATGTTAGGACCAAGATACGATGATCAGGTTGCAGAAGAAAATCGTTTTCACCCAAGTATGTTGTCCAACTACTTAAAGAGTCTCAAG
Seq A exon
GAGGAAACCTATGAGAGCATGGCTGAGAGAATGACTGTGGTAGTTGCTGCGATGTCAGTGTTTGGGAGCACAGCAAAGCACCTGTGTGATGAGCATACAG
Seq C2 exon
GTTAAAATGGGTTTGCTGGTCGACTTGACCAACACCAATAGATTCTATGATAGGAACGATATACAGAAAGAGGGGATTAAATATATAAAGCTCCAGTGTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787-'3-2,'3-1,5-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.088 C2=0.007
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PU(9.0=32.4)
A:
NO
C2:
PF0078215=DSPc=FE(25.4=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTTTTTACCTTTGAAGACAATG
R:
TCCCCTCTTTCTGTATATCGTTCCT
Band lengths:
186-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]