GgaEX0023251 @ galGal3
Exon Skipping
Gene
ENSGALG00000015842 | TIAM1
Description
NA
Coordinates
chr1:107933510-107941477:-
Coord C1 exon
chr1:107941374-107941477
Coord A exon
chr1:107937857-107938276
Coord C2 exon
chr1:107933510-107933689
Length
420 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTTGCTGCATTTCAGCCT
3' ss Score
8
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GGCATTCGCTTTGTGGCGACCCGGACAGCTCTGTTGAGACAGCACCAGAAGAGGCAGAAGCGCAAGACTTGGAGTCATCCGATGAGGCCGATAAGATGAGCAAG
Seq A exon
CCTTTCTGCTGAAATTATCATCTGCATGTTTCCATGAAGAGCAGCGTTACATCTTCAGCTGCGACTCCTGGCCAGCCCTTAATTCCAGCTGATGTGGTGAGTGAATGAGGCCCACGGCAAACGACACACGAGGAGAGGCTCTGCCTGGATAAATACGGTCACTGCCCCTTCTTGTTAAAGCGTGGCCATCTTCTGCATGTCTCAAAGTGAGGAATATCTCTCCGGAGTGGGGGAGCGTTTCGGATCAGCTGAATATGTGGAGAGCCGGGGTTTTTCTCACAGCTGAGGCTGGAAGCACGGAGTGACAGCGCTGCCAGCACTGCCTTCCTGGCGATGTCGGCTCTGCGGAGGGTTAACCGTAAGCTCAAGAATGAAAGTGCTGTGGGATCCGGCGACTCTCTGTACCGTATGCTGTATTTG
Seq C2 exon
AGTACAGAGCAGGTCGCCGCTTTCTGTCGCAGTCTTCATGAGATGAACCCTTCTGACTCAAGTGCACATCCTCAGGAATTCACAGGACCCCAACTGGCCACCATGAGACAGCTCACAGATGCAGATAAACTGCGAAAGGTCATCTGCGAACTTCTCGAAACAGAGCGCACCTACGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015842-'18-21,'18-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=1.000 C2=0.439
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(13.3=21.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGGCGACCCGGAC
R:
GTAGGTGCGCTCTGTTTCGAG
Band lengths:
270-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]