GgaEX0023275 @ galGal3
Exon Skipping
Gene
ENSGALG00000015850 | SFRS15
Description
NA
Coordinates
chr1:108143686-108145541:-
Coord C1 exon
chr1:108145441-108145541
Coord A exon
chr1:108144905-108144952
Coord C2 exon
chr1:108143686-108143794
Length
48 bp
Sequences
Splice sites
3' ss Seq
CATACTAGTTTTTCCCACAGGAC
3' ss Score
7.47
5' ss Seq
TGGGTTAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AAGCTGCTAGATCGGTTTGACTACGACGATGAACCAGAAGCAGTGGAAGACTCAAAGAAAGAAGATTCAGCTCCTTCTCCTTCAGTTTCTCAGCCTGCCTT
Seq A exon
GACCTCTCTCTCATTCCATGCACAGGCTGGATGGTGCTCAGTACCTGG
Seq C2 exon
TGGATTTGCAGGAGAAGGTATACAACAGCCAGTATTTCCTCAGCTCCCAAATATGGATCCTTTTCAACAACGAATGATGGGAATGCAACAGGATCCAATGCGCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.176 C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGTTTCTCAGCCTGCC
R:
CTGATGGCGCATTGGATCCTG
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]