GgaEX0023393 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83629285-83631263:+
Coord C1 exon
chr3:83629285-83629380
Coord A exon
chr3:83630985-83631108
Coord C2 exon
chr3:83631210-83631263
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCTGTGTTTTTAGTAT
3' ss Score
9.12
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GGGCCACCTGGTCCTCGTGGTGAGACAGGTCCTCCAGGTCCTCAAGGCCCTCCAGGTCCTCAGGGTCCCAACGGGCTTTCAATCCCAGGAGAACCG
Seq A exon
TATAATGTCAGCCAGTTGTCCTGTGTTTGCAAATGTTTATAAGATGAGTGTTACTTCAATCAAGAGGTATATGTATCTTGTTTTTCCCATAGTACATAGATGGCTTATGGACTCCTTCGTTGAG
Seq C2 exon
GGTCGGCAAGGAATGAAAGGTGATGCTGGCCAGCCTGGACTACCAGGACGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'70-76,'70-74,71-76
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(48.3=87.5),PF0139113=Collagen=PU(10.5=18.8)
A:
PF0139113=Collagen=PD(0.1=0.0)
C2:
PF0139113=Collagen=FE(29.8=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGTCCTCGTGGTGAG
R:
TGATCGTCCTGGTAGTCCA
Band lengths:
146-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]