GgaEX0024563 @ galGal4
Exon Skipping
Gene
ENSGALG00000016584 | EGFL6
Description
epidermal growth factor-like protein 6 precursor [Source:RefSeq peptide;Acc:NP_001264667]
Coordinates
chr1:122492835-122496752:-
Coord C1 exon
chr1:122496633-122496752
Coord A exon
chr1:122495335-122495575
Coord C2 exon
chr1:122492835-122492954
Length
241 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCCCTGTTATGGCAGGAA
3' ss Score
6.23
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
ATCTGAATGAATGTGGACTGAAACCACGTCCCTGTGAACACAGATGCATGAATACACATGGCAGCTACAAGTGCTATTGTCTCAACGGCTACATGCTCATGCCAGATGGCACATGTGCAA
Seq A exon
GAAGACTGAAACTGCAGCAGAAGGTGCTTGGGGCCAGAGCTCTTGGAGGCTTCCCCTTCCCTGCAGTGCGTGATGCATCTTACCAGCAGACAACAGCTGTGGATTCTTTGAGATCTCTAAGAAATGGATATATATTTCTTCTGTTTCTTCCAAGATATTTTTTGTATCTGCTGACATCATACACTGAGCTGGTTTCAGCAAGGCCACTGCATTATGGACAGCCGAACTTCAGAAGCCAGAG
Seq C2 exon
GCTCTAGGACATGTGCCATTGCGAATTGCCAGTACGGATGTGAGGAAGTCAAAGAGGAGGTACAGTGTCTTTGTCCATCAGTTGGCCTCCATTTGGGACCAAATGGAAGGACATGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016584_MULTIEX2-4/9=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=PU(87.8=87.8)
A:
NO
C2:
PF146701=FXa_inhibition=PD(9.8=9.8),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
ENSGALT00000026770fB3097
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAATGAATGTGGACTGAAACCA
R:
TGCATGTCCTTCCATTTGGTCC
Band lengths:
236-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]