GgaEX0024688 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFF7]
Coordinates
chr3:108402970-108405047:+
Coord C1 exon
chr3:108402970-108403119
Coord A exon
chr3:108404052-108404212
Coord C2 exon
chr3:108404874-108405047
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACCGTCTTTTCCTTTGCTAGGGA
3' ss Score
9.77
5' ss Seq
TCGGTAATT
5' ss Score
7.06
Exon sequences
Seq C1 exon
GTGTTGTATTTTCTAGTGGAGAAAACTGGAAAGTGATGAGAAGATTTACTCTTACAACCTTACGAGACTTTGGGATGGGAAAGAAGGCCATAGAAGACTATGTTGTAGAGGAGTATGGATACCTGGCAGACGTAATTGAGTCACAGAAAG
Seq A exon
GGAAGCCCCTTGAGATGACTCACTTGATGAATTCTGCTGTTGCTAATGTCATTGTATCCATATTGCTTGGAAAACGGTTTGAATATGAAGACCCCACATTCAAAAGACTTGTGTCACTGATAAATGAAAATATGAGGCTTTTTGGAAGTCCATCAGTGTCG
Seq C2 exon
CTGTACAATATGTTTCCCATCCTTGGACCCTTCCTGAAGGACAACAAAAGTTTTCTTGAGAATGTAAAAGAAGTCAATGATTTTATCAAGGTTACTTTCACAAAATATCTCCAAGTCCTGGACAAAAATGACCAGAGGAGCTTCATCGACGCTTTTCTTGTCAAACAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTACGAGACTTTGGGATGGG
R:
AAAGCGTCGATGAAGCTCCTC
Band lengths:
248-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]