GgaEX0025334 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P587]
Coordinates
chr1:170575659-170627830:-
Coord C1 exon
chr1:170627730-170627830
Coord A exon
chr1:170621884-170622015
Coord C2 exon
chr1:170575659-170618202
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTCGTTTGTACTTTGGCAGATT
3' ss Score
7.3
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AGAGGTTCCTCTGGTCTATCTGAGCCCTCAGCATTAGACCTAACTTCATCCTGCTCCCAAAGCGACCGGGCGAGATCAAGGTGTGAGGAGCATCCTGCCTG
Seq A exon
ATTAAGGTGGAAAAGGCTTTTTGGAAGAACTTTGAGCCAAAGAGCAATCCTACTGCTAGCAATCACAACACTGTGAAAACCTACAAAGTTCAGACAAAGTCACTGAAAGGAGAACAAGTCCATCTCCCCGAG
Seq C2 exon
ATGCTGTAGAACCATGGAAAGACTGGTATTTTTGACAATCTTTTGTTTGCTGCTAGCCAGTACACAGCAAAAACCTTCGTAAGTATATATTATTATTATCTTTTCACTCATAACAAATCCTTTGAAACAGAAAGTAGGAAGTCTTTGTGGTCTTGAAAGAGAAGGGCAGCGCTGAGCTCTTCTCTCTGCAACAGCAACAGGGCCCGAGGGAATGGCATGGAGTTGTGTCAGGGGAGGGGCAGCTGGGGGTTAGGACAGGGTCTGCACCAGAGGGCGGTGGGCATGGAACAGGCTCCACAGGAAGGAGTTCAAGGAGCATTAGAACAGTGCTCTCAGAAATATCGTCTGCTTTTTGTGCGGTGCTGTGTGGAGCCAGGAGTTGGACTCAATGATCCTTGTGGTTCTCTTCCAACTCATGATAGTCTACGATTCTACATGAAGATACATGAATTCATAATATCAGATATATTATCACATATTGCAGATGTTTTTTCTCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017040-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0175916=NTR=PD(24.3=57.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGATCAAGGTGTGAGGAGC
R:
CAACTCCATGCCATTCCCTCG
Band lengths:
256-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]