GgaEX0025949 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79205249-79206971:+
Coord C1 exon
chr1:79205249-79205411
Coord A exon
chr1:79206007-79206221
Coord C2 exon
chr1:79206756-79206971
Length
215 bp
Sequences
Splice sites
3' ss Seq
TACCTCCTTCCTTTTCCCAGGTG
3' ss Score
10.49
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
AGTACAGTGGTGCGCAAGGCTCTGGGGTGTATCATTCCTTCCCTTCCCAAAGCTACCAGCACTTACACACAGGCCCTGCTGGCCTACACCTTTGCCCTGGCTAAGGATCCTCAGCGCACACAAGAGCTTCTTGACATACTTGATGAAAAGGCAATCAGAGCAG
Seq A exon
GTGGGCAGATCCATTGGAGTCAGACCCCATCCAAGGCACACAGCACTAGCCTTTGGTCACAGCCACTGTCTGTGGATGTGGAGTTAACAGCTTATGTCCTCCTGGCCCTGCTCTCCAAGCCAAATGTCACAGAGGCTGACTTCACCATAGCCTCTGGCATTGTGGCGTGGCTCACCAGACAGCAAAATGCCTATGGAGGATTTGCCTCAACCCAG
Seq C2 exon
GATACGGTAGTTGCCCTGCAGGCCTTGGCTAAGTATGCAGCGCTGACACACAACACAAAAGGGGTTGCAGAAGTGAGAGTGAGGTCCCAGAGAGGCTCTGGGAGGAAGTTCCAAGTTTCCTACCACAATCGGCTTTTGGTGCAGGAGATGGCACTGAGAGAAATCCCAGGAAAGTTCTCAGTGCAGGCCCATGGCAGCTGTTGTGTCTTTACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-24/25=23-25
Average complexity
C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(22.0=100)
A:
PF076789=A2M_comp=PD(15.4=52.1)
C2:
PF076789=A2M_comp=PD(5.3=18.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGGGGTGTATCATTCC
R:
TGCCATCTCCTGCACCAAAAG
Band lengths:
299-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]