GgaEX0026617 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BY32]
Coordinates
chr3:108411582-108415446:+
Coord C1 exon
chr3:108411582-108411731
Coord A exon
chr3:108412127-108412287
Coord C2 exon
chr3:108415262-108415446
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTGTTCATTGTGTAGGAA
3' ss Score
8.27
5' ss Seq
ACGGTAATG
5' ss Score
6.53
Exon sequences
Seq C1 exon
GGATTGTTTTTGCTCACGGTGAAAACTGGAAAGTGATGCGAAGGTTTACTCTCACAACCTTACGAGATTTTGGGATGGGAAAAAGAGCCATTGAGGACCGCATTGTGGAGGAGTATGGCTATCTGATAGACAACGTTGGGTCACAAGAAG
Seq A exon
GAAAACCCTTTGATGCTAGTAAAATAATTAATGCAGCAGTTGCTAACATAATTGTGTCAATATTACTTGGAAAACGATTTGACTACAAAGACTCCAGATTTATAAGGCTTCAACATCTGACCAATGAAAGCATGAGGCTTGCAGGGAAACCTTTGGTTACG
Seq C2 exon
GAAAGGTCCAAGAAGAGATAGAGCAAGTGATCGGGTCAAACCCCCCACGCATTGAGCATCGAACTCAAATGCCATATACAGATGCTGTTATCCATGAAGTTCAGCGGTTTGCTAATATCCTGCCATTGGATTTGCCTCATGAGACTGCTGAAGATGTCACTCTCAAAGACTATTTCATTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022812_MULTIEX1-1/5=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCACGGTGAAAACTGGAA
R:
GCAAACCGCTGAACTTCATGG
Band lengths:
252-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]