GgaEX0026660 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79353948-79355333:+
Coord C1 exon
chr1:79353948-79354176
Coord A exon
chr1:79354450-79354576
Coord C2 exon
chr1:79355212-79355333
Length
127 bp
Sequences
Splice sites
3' ss Seq
CGCCTCTCTACAAATGGCAGGTC
3' ss Score
4.76
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
CTCTGAGGGAAACGCTGAACTAGATGTGACCATCCCTGACACCATCACTGAATGGAAAGCCAGTGCATTCTGCATGTCCCCAGACACAGGCTTTGGCCTGTCACCAACAGTGTCCCTCAGAGCCTTCCAGCCTTTCTTTGTAGAGCTCACCCTGCCTTATTCTGTAGTGCGTGGTGAGGCCTTCACGCTGAAAGCTACTGTTTTCAACTACCTGACAGCCTGCATCAGA
Seq A exon
GTCAGCGTGATTCTGGCTCAGTCTACTCAATTTCTGGCTACTCCAGTGGAAAAGGAGGAAGACTCTCATTGTCTCTGTGAGAACGGGAGGAAAACAGTGGCTTGGCTGGTGACTCCCAAATCTCTAG
Seq C2 exon
GGCTGGTGGAGTTCTTGGTGAGCACTGAGGCCCTCCAGAACCAGCAGCCATGCAGAAACACCACAGTGGAGACCCCTGAAAAAGGGCGGAAGGACACAGTCATCAGGCAGCTGTTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'32-34,'32-33,33-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.293
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.5=100)
A:
PF0020717=A2M=PD(4.4=9.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACAGTGTCCCTCAGAG
R:
AACAGCTGCCTGATGACTGTG
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]