GgaEX0026712 @ galGal3
Exon Skipping
Gene
ENSGALG00000023130 | HXA11_CHICK
Description
NA
Coordinates
chr2:32599245-32611953:-
Coord C1 exon
chr2:32611856-32611953
Coord A exon
chr2:32603213-32603762
Coord C2 exon
chr2:32599245-32600879
Length
550 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCTTTTCTGCCCCAGACC
3' ss Score
10.89
5' ss Seq
CCAGTACGT
5' ss Score
7.19
Exon sequences
Seq C1 exon
CTCGCTGCTGCGGAGGTCTCCAGCCCAGCGTAGGATCCTCGCTGTCAGCCTCCGCGGGGATTGCTCTTTGCACAGGAGAGACACGTCGGGATGCCGCG
Seq A exon
ACCCCGTCTTCTCGCCCTATGACATACTCCTACTCCTCCAACCTGCCCCAGGTCCAACCCGTGAGAGAAGTGACCTTCAGGGAATATGCCATTGATCCCTCCAGTAAATGGCACCCCCGGAACAACCTGCCCCACTGCTACTCCGCAGAGGAGATCATGCACAGAGACTGCTTGCCTTCCACCACCACCGCCAGCATGGGCGAGGTGTTCGGCAAAAGCACCGCGAACGTCTACCACCACCCCAGCGCCAACGTCTCCTCCAATTTCTATAGCACGGTGGGCAGGAACGGGGTCCTGCCGCAGGCTTTCGACCAGTTTTTCGAGACGGCGTACGGCACGGCGGAGAACCCGTCCTCCGCGGACTATCCGCCGGACAAGAGCGGCGAGAAGGCGCCCGCGGCCGCCGGGGCGACGGCGGCAACTTCAAGTTCGGAGGGCGGCTGCGGCGGGGCGGCGGCGGCGGCGGGGAAGGAGAGGCGGAGGCGGCCGGAGAGCGGCAGCAGCCCCGAGTCATCTTCCGGCAACAATGAGGAGAAATCCGGCAGCTCCA
Seq C2 exon
GTGGACAACGGACCCGTAAAAAGAGATGCCCCTACACCAAATATCAGATTAGAGAGCTAGAAAGGGAATTCTTCTTCAGTGTCTACATAAACAAAGAGAAACGCCTCCAGCTCTCCCGAATGCTCAATCTGACCGACCGCCAAGTAAAAATATGGTTTCAAAACAGAAGAATGAAAGAAAAAAAAATTAACAGGGACCGATTACAATATTACTCAGCTAATCCACTACTTTAAAACTCGTAGCGTTTTTCAAGACGAGATTAAATTCAGATTTCGCCCTTGACAAGGTCAAGCCACGAGGTTACGTGGAGGAAGGAGGTGTGTATCTGACGGGACTCGAAGAACCCGAGGTTTTCCGTACATGTAAATCTGCTCTGGACCTTCCGTGACGGTTTATTGTTTTGTCTATATATTTACGTACCAACTGGAATCGGTTTGATTTTGCCACACGTGGCGTCCATCCATTTCCACCGCGCGCGTCACCTCCGAGCGCCCGGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023130_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.608 C2=0.273
Domain overlap (PFAM):
C1:
NA
A:
PF120453=DUF3528=WD(100=67.3)
C2:
PF0004624=Homeobox=WD(100=73.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCACAGGAGAGACACGT
R:
CCTCCTTCCTCCACGTAACCT
Band lengths:
351-901
Functional annotations
There are 0 annotated functions for this event