GgaEX0026912 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:2292221-2294782:-
Coord C1 exon
chr17:2294623-2294782
Coord A exon
chr17:2293281-2293508
Coord C2 exon
chr17:2292221-2292283
Length
228 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCTTTTTGGGTCAGTAT
3' ss Score
5.59
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCTCAGCCATCCCACCCGCTCTGACGATCTCCTTGCAGCCCTGACTGTGGCCCTGAAGTCATCCCCCTTTGACTTTCAGGGGGTACAAATCTTGTCCAGTCCAGATGAGGAAGCATTCAACTGGGTTGCTGTTAACTACGTTCTGGAGAACTTCTTCAAG
Seq A exon
TATGACTGGCGAGGACAAATGGTGCCCTCCAGAAATGGGATAGCAGGTGTCCTGTCCATAGGAGGAACCTCAACACAGCTCACTTCCACAGTAGAAGAAAGGAACCAGATAACCAAGGAGGGAGTGAGACTGCAGCTGTATGGGCAGACACACACAGTGTACACCCACCACTGTCCCTGCCACAGCACAGAGCAGCTCCGCAGCAGGCTGCTCTCCATGCTCATGCAA
Seq C2 exon
GAACAAAGTAGTGCTAAAACTGTGCCTAACCCCTGCTGGCCCCTCAGCTACTCCCAGGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023909-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(21.6=100)
A:
PF0115012=GDA1_CD39=FE(30.6=100)
C2:
PF0115012=GDA1_CD39=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGCCATCCCACCCG
R:
CTTCCTGGGAGTAGCTGAGGG
Band lengths:
221-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]