GgaEX0026919 @ galGal4
Exon Skipping
Gene
ENSGALG00000023950 | CR1L
Description
complement component (3b/4b) receptor 1-like precursor [Source:RefSeq peptide;Acc:NP_001028815]
Coordinates
chr26:2599778-2602020:+
Coord C1 exon
chr26:2599778-2599963
Coord A exon
chr26:2600536-2600632
Coord C2 exon
chr26:2601829-2602020
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTGAGCATTTGCCCTCCCAGGAA
3' ss Score
7.26
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GTGACTGCCCGCAGCCGCCGAGGTTCTCTTTTGCGGAGCCCCCCGGCCCCACCAACTCTTCGTACCCCGTTGGGGCGGTGCTGCGGTACCGCTGCCGCCCGGGGTACACGGGAGATAGGAACAAGCTCCCCAGCGTCACCTGCCTGCCCAACTCCACCTGGGCGTCGGACCCCGACTTCTGCATCG
Seq A exon
GAAAGTCGTGCGGGCAGCCAGAAATACCGAATGGCAATTTCCACTTCAGCACCAACCTTCAGTTTGGAGCTACGATAAACTTCACCTGCAAGGCCGG
Seq C2 exon
TTATTCCCTGTCAGCCACCTCCCCCGATTGAGAATGGGACGCCCAGTAGTGTGCACGGGGAGTACACCTTTGGGGTAGCTGTGACTTACAGCTGCAAGAAAGGTTTATCTCTCATTGGAAACGCCACAATTCACTGCACAATGGATGATAACCTCAATGGGATATGGAGTGGTCCAGCCCCGGAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023950_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.7)
A:
PF0008415=Sushi=PU(51.8=87.9)
C2:
PF0008415=Sushi=WD(100=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTCTTCGTACCCCGTTGG
R:
TCCCATTCTCAATCGGGGGAG
Band lengths:
173-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]