GgaEX0026921 @ galGal4
Exon Skipping
Gene
ENSGALG00000023950 | CR1L
Description
complement component (3b/4b) receptor 1-like precursor [Source:RefSeq peptide;Acc:NP_001028815]
Coordinates
chr26:2602404-2603156:+
Coord C1 exon
chr26:2602404-2602586
Coord A exon
chr26:2602718-2602903
Coord C2 exon
chr26:2603063-2603156
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTCTCCAATTGTCAGGAT
3' ss Score
6.34
5' ss Seq
CACGTGGGT
5' ss Score
4.46
Exon sequences
Seq C1 exon
ACGTGAGATGTGAAAAGCCAGAAGTGGAAAATGCAAAGAATTTAAATAGCTTTGCCACTGAGTACACCTATGGAGAAAAAGTGAGCTTTGAGTGTGCTCCTGGGCACGCTTTGAGCGGAGCTCAGACGGTTACCTGCGATGCAGACAATACCTGGAAGCCATCTCTGCCATCGTGTGACCCAC
Seq A exon
GATACTGTGGCTCTCCTCCCAGCATCCCTTCTGCTGAGTTAATAGGGGCTGCAGGCAACAGCTTCATGGCTGGAACGAAGCTGACATACCAGTGTCAGCCAGGTTTCACCACAGAGAGTGGGAAGTCCCTGGAGGTCACCTGTCTGATGGATGCAACCTGGACTTCAGGCTCTGTGCTGTGCACAC
Seq C2 exon
GTCAGCAATGCACTGCTCCCACAATACCGAACGGGATTGTGAATGGGGACAGTTTCCTGTTTGGGACAACTGTGACCTTCTCCTGCAACGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023950_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=90.3)
A:
PF0008415=Sushi=WD(100=93.7)
C2:
PF0008415=Sushi=PU(50.0=87.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGAGATGTGAAAAGCCAGA
R:
TCACAGTTGTCCCAAACAGGA
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]