GgaEX0026922 @ galGal4
Exon Skipping
Gene
ENSGALG00000023950 | CR1L
Description
complement component (3b/4b) receptor 1-like precursor [Source:RefSeq peptide;Acc:NP_001028815]
Coordinates
chr26:2603496-2604741:+
Coord C1 exon
chr26:2603496-2603581
Coord A exon
chr26:2604168-2604374
Coord C2 exon
chr26:2604718-2604741
Length
207 bp
Sequences
Splice sites
3' ss Seq
CTTGGTGGTGTTCCCCATAGGAC
3' ss Score
10.15
5' ss Seq
GAGGTGATC
5' ss Score
3.49
Exon sequences
Seq C1 exon
GTACGAACTAAAGGGATCATCTTCTGCCAAATGCGTGGCAGTGGAAAGTGGAGTTGAATGGGACGTGAAGCTCCCATCCTGTGAAA
Seq A exon
GACGGCGCTCTGATGTTCTCTGTGAACAGCCCCCCAGCATCGGCAATGGGGTGCACAACGGCACGGGGGGCACAGCCTTCCCCCTGGGCTCCGTTGTGGTTTATTCCTGCAATGATGGCTTCAACCTGGTTGGAGACAGAGCCATTCAGTGCCTAGCAACGACCCAGGACCGCGGAGTCTGGAGCACACCCACTCCTGAGTGCAGAG
Seq C2 exon
GCGGAGCGAGCAGCATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023950_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(48.2=90.0)
A:
PF0008415=Sushi=WD(100=87.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]