GgaEX0026925 @ galGal4
Exon Skipping
Gene
ENSGALG00000023953 | CR2
Description
complement component (3d/Epstein Barr virus) receptor 2 [Source:HGNC Symbol;Acc:HGNC:2336]
Coordinates
chr26:2576519-2577835:+
Coord C1 exon
chr26:2576519-2576652
Coord A exon
chr26:2577105-2577293
Coord C2 exon
chr26:2577736-2577835
Length
189 bp
Sequences
Splice sites
3' ss Seq
GATGGTGTTTCTGTCGGTAGGTG
3' ss Score
8.13
5' ss Seq
TACGTGAGC
5' ss Score
4.3
Exon sequences
Seq C1 exon
AGAAAAAGCATGCTGTGACATCTGCAACGTGGTCAGGATGAGGATGGTGTCAGCTCTGGGGTCAGCGAGACCAAGGGGCCGTGCTGCTGTCCTGGTGCTGCTCCTCACTGCTGCCCTGGTGGTGGGCACCCAGG
Seq A exon
GTGCCTGCAGTGCTCCGCCACGGTTCTCATTTGCAGAACTGAAGGAGGGCTACCTTCACAACAGGACGTTTTCCACCTCTGATGTGGTGGAATACAACTGTCGGCCGGGCTACATGAGAAATACCATGGCCCGGAACACTTTCATTTGTGAAAAGAACAGGTGGAAAGGATCGAGCAACTTCTGCTTAC
Seq C2 exon
CAAGACCCTGCAGTTACCCAGGAGAGCCGATGAATGGCCGGCTTGTGGAAGCAGAGCAGTTCACCTTCGGGTCCACAGCAAACTACAGCTGTGACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023953_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=93.8)
C2:
PF0008415=Sushi=PU(51.7=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAAGCATGCTGTGACATCTG
R:
CCAGTGTCACAGCTGTAGTTTG
Band lengths:
234-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]