GgaEX0026927 @ galGal3
Exon Skipping
Gene
ENSGALG00000023953 | C4BPA
Description
NA
Coordinates
chr26:2448670-2450246:+
Coord C1 exon
chr26:2448670-2448882
Coord A exon
chr26:2449344-2449526
Coord C2 exon
chr26:2450058-2450246
Length
183 bp
Sequences
Splice sites
3' ss Seq
GCGGTGTTTCCCCCACGCAGAGG
3' ss Score
8.02
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CAATTCCATGTTTACCCCCACCCGTAATAGCAAACGGAGAGCACAACGGAGGCCACATCGAGCTCTTCACTTACGGAGCTTCTGTCACCTACCACTGCCACGCTGACATCAGGGGGAGGAAGCATTTCTCACTGGTGGGGGATGCCTCTATTTTCTGTACGACCATCGACAATGTGAACGGCGTCTGGAACAAGCCAGCCCCGGAGTGCAAAG
Seq A exon
AGGTGAGCTGCAGGGAGCCCCATGTGGAGCACGGCAGGCTGCAGAGCAGGTACAGAGCTGAGTACACCTACGGCGACACCATCATCTTCGACTGTGAATTCCGCTACGCGCTGCTGGGCAGCGACACGGCCACGTGCCAGGAGGATGGCAGCTGGGATCCACCACCACCACAATGCCAGCGCA
Seq C2 exon
GCAGCTGTGATGACCCTCCTGACGTGCAGAATGCTGTTAAAGCAAGACTTGCGGGCAATTTATTTCCTATTGAGACTGTCATCACTTATGAGTGCAAGACGGGCTATGAGTTCAGCCCTGGAGTAGTGATGGAACACATCAGTTGTCAGCCAGACTATACATGGACTGAAGTTCCACCGCCCTGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023953_CASSETTE2
Average complexity
S*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.177 C2=0.062
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.1)
A:
PF0008415=Sushi=WD(100=90.3)
C2:
PF0008415=Sushi=WD(100=93.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTCACCTACCACTGCCA
R:
CTCATAGCCCGTCTTGCACTC
Band lengths:
244-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]