GgaEX0026991 @ galGal3
Exon Skipping
Gene
ENSGALG00000024344 | F1NKF8_CHICK
Description
NA
Coordinates
chr16:330043-330890:-
Coord C1 exon
chr16:330615-330890
Coord A exon
chr16:330247-330519
Coord C2 exon
chr16:330043-330164
Length
273 bp
Sequences
Splice sites
3' ss Seq
ACAGCATCATCCATCTGCAGTGC
3' ss Score
4.85
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GGTCTCACACACTGCAGAAGATGTTTGGCTGTGACATCCTGGAGGACGGCAGCATCCGAGGGTACGATCAGTATGCATTTGATGGGAGGGACTACATTGCCTTTGATATGGACACGATGACGTTCACCGCGGCGGATCCAGTGGCAGAAATCACCAAGAGGAGATGGGAGACAGAAGGGACGTATGCTGAGAGATGGAAGCATGAGCTGGGGACTGTCTGTGTTCAGAACTTGAGGAGATACCTGGAGCATGGGAAGGCAGCGCTGAAAAGGAGAG
Seq A exon
TGCTGCCTGAGGTGCGAGTGTGGGGGAAGGAAGCGAACGGGATCCTGACCTTGTTCTGCCGCGCTTATGGCTTCTACCCGTGGCCCATCAGCCTCAGCTGGATGAAGGACGGCATGGTCCGGGACCAGGAGACCCACTGGGGGGGCGTCGTGCCCAACAGCGATGGCACCTACCACGCCTCGGCTGCCATTGATGTGCCGCCGGAGGATGGGGACAAGTACCGGTGCCATGTGGAGCACGCCAGTCTGCCCCAGCCCGGCCTCTTCTTGTGGG
Seq C2 exon
AGCCACAGCCCAACCTGATCCCTTCTGGGGCTGGGGCAGTCATCGCCATTGTGGCTGTCATCGCTGCGGTCGTTGGATTGGTGGTGTGGAAGAGCAAGTCAGATAAAGGCAGAGAGCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024344-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
86%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(50.0=94.6)
A:
PF0765410=C1-set=WD(100=87.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGGGACTACATTGCCTT
R:
GACTTGCTCTTCCACACCACC
Band lengths:
294-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]