Special

GgaEX0027148 @ galGal4

Exon Skipping

Gene
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr11:9234569-9240164:+
Coord C1 exon
chr11:9234569-9234790
Coord A exon
chr11:9235578-9235716
Coord C2 exon
chr11:9238051-9240164
Length
139 bp
Sequences
Splice sites
3' ss Seq
AATTTCTATTCTGCTTTCAGGTG
3' ss Score
10
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCCGTAGTGCCATAAATAACGAGATATTGCTATCGGGCCGATGGCGGACATCCGGCCCGGACTGTGGTGCCCGCTGCCAGCAGCGAGGACCCGTCCCCATGGTAACGGCAGAGAGGCGGCGGCACAGTGGCGATACCCCCCCCACGCCGATCACCTGATCCGCGCTCGCCCGTCACGTGATACGGTCTCCATCGTCGCCATCTTGAAGCGGTGTCCAAGGGG
Seq A exon
GTGAAACAAGTAGGGCCAATATTTGCTTGTTCAGAATTATTGCTTCGAGGAGATGTTCCAAACACGAATGCTGCAGTGTGAGTCTGAGTTTCCCAGCACTTACTGAACTTTTCAATTATAAGGAACTCCAGCCCAAACA
Seq C2 exon
ATATTATGGAAGAAGGAAGTAGTGTTGCAGTATTGATGCCAAGTATTGGAGAACAGGAGGCTGTACTGATCTCTGAAACAGTCATTGGCCCAACACTACAAAACAGTGAAGATCAGAGAAAATGTAAAACTGATCCATTAATCCACGTTATCCAGAAGCTAAGCAAAATAGTTGAAAGTGAGAAATCACAAAGATGCCTTTTAATAGGGAAAAAACGTTCCCATCCTGACGCTTCTGCACAGTCCTTTGATACAGATAATCTTTGTGAAATCCCAGCTAAAGCAATTGAGCTATCTGTTATTGCTGCTAAAAAGACTGAAGAGTTACAAGCTGACTATTTTGTGACTGAATGTCTTCCACAAAGCAAAAAGAAGGTGACATGCTACCAGTGCAGTCTATGTAAATTTCTATCACCTTCTCTCTTAACGCTACAAGAACATATAAAACAACACGGGCAGAAAAACGAAGTGATACTGATGTGCTCAGAATGTCATTTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004532_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact

5' UTR

Show structural model
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.320
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
PF139091=zf-H2C2_5=WD(100=3.4),PF138941=zf-C2H2_4=WD(100=3.4),PF138941=zf-C2H2_4=WD(100=3.4),PF0009621=zf-C2H2=PU(50.0=1.7)


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTGAAGCGGTGTCCAA
R:
GCGTCAGGATGGGAACGTTTT
Band lengths:
257-396
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]