GgaEX0027410 @ galGal4
Exon Skipping
Gene
ENSGALG00000009217 | TBC1D24
Description
Gallus gallus TBC1 domain family, member 24 (TBC1D24), mRNA. [Source:RefSeq mRNA;Acc:NM_001257271]
Coordinates
chr14:13940132-13949671:-
Coord C1 exon
chr14:13949618-13949671
Coord A exon
chr14:13943259-13943476
Coord C2 exon
chr14:13940132-13941154
Length
218 bp
Sequences
Splice sites
3' ss Seq
GTTTCCCTTGTGGTTCCCAGGTG
3' ss Score
9.56
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
ATCCAGCAGAAGGGTGGAAGTCATAGGAAGATCTGTACAAGGACAAGTTTCAAG
Seq A exon
GTGGAGAATGACAGAAAAACCTGAACTCCCACAGAGCTGACGTGGACTGCAGTGGACTGATGTCCTACCATTACTGCCTCTGCATACCCTGTAGATGTGCTCACGGACAGACAGTGCTTCCAAACACTGTAAGACGCCCTGCTTGCAGAAGTGAATTAGGGACTACACATCACCTCTTCAAGAATTAACTTTAAATAAGAGTACAACAGAAAGAAATG
Seq C2 exon
GAAAAGCCACAGGTCATTTAATGATCACTTCTCATAGCTTTTCTCATATGCTTCCCTTGGAGTCATGGATGAATACAACCGCTTTGTGGATTGGGACAAAATGGATGTTACTGTCCAGAGCCAGGACATAAAGGAGCTGACCTGCACGGAGTTCCAGGAGCTGAAGCAGCTGGCCCGGCAAGGCTACTGGGCCAAGAACCACTCGCTGAGAGCCAAAGTGTACCACAAGCTGATTAGCAATATCCCATGTCGCACAGTGACCCCAGATGCAAATGTTTACCGGGACATTGTGGTGAAGATAGTTGGAAAGCGTAGCAGTAGCTCCCTTCCACTGCCAGAGTTTGTGGACGACAGCCTTGTCCCCACGTACTGCTTGAATGCAGAAGGCATTGGGGCAGTTAGGAAGATTATACTGTGCATTGCAAATCAGTTCCCAGACATATCGTTCTGCCCTGCGCTGCCTTCTGTGATAGCTTTGCTCCTCCACTACAGCAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0056613=RabGAP-TBC=WD(100=65.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGAAGGGTGGAAGTCAT
R:
TGTGCGACATGGGATATTGCT
Band lengths:
307-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]