GgaEX0027428 @ galGal3
Exon Skipping
Gene
ENSGALG00000002214 | ERI2
Description
NA
Coordinates
chr14:15640139-15640695:-
Coord C1 exon
chr14:15640539-15640695
Coord A exon
chr14:15640356-15640450
Coord C2 exon
chr14:15640139-15640239
Length
95 bp
Sequences
Splice sites
3' ss Seq
GTTATTCGTGCCTGGTGTAGGAC
3' ss Score
6.82
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
Exon sequences
Seq C1 exon
AAACAAGTTGATGAAGGAGTCCCTCTGCACATCTGCTTGTCACAGTTCTTGAAGTGGCTTCAGGAGATACAAAAGGAGAAGAAAATTCTGTTCAGCTCAGATATCCCAAGGAATGCCATTCCAGAGGCAAAGCTGTGTACTTTTGTTACCTGGACAG
Seq A exon
GACTGTCCTGCAGTGATGGCTGTAAGGCAGCAGCGCCCACCACCCCATCGCAGGTCTGCTGCTATGTGGCTGTGCACCTTCTTGCCCAGCTGTTG
Seq C2 exon
ACTGGGACCTGGGTGTGTGCTTGCACTACGAGTGTAAGAGGAAGCAGTTATGGAAACCTGACATCTTCAATTCATGGATTGATCTCAAAGCAACATACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002214_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(27.7=100)
A:
PF0092919=RNase_T=PD(16.5=71.9)
C2:
PF0092919=RNase_T=FE(17.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGTCCCTCTGCACAT
R:
CAAGCACACACCCAGGTCC
Band lengths:
169-264
Functional annotations
There are 0 annotated functions for this event